This article explains the steps to safely delete logical systems (LSYS) from an SRX device using the Junos Space Network Management Platform.
To delete logical systems from the Junos Space GUI:
Note: When you delete an LSYS from Security Director/Space, it removes the LSYS-related configuration from the device.
For more details, see https://www.juniper.net/documentation/us/en/software/junos-space21.2/junos-space-workspaces/topics/task/platform-logical-system-deleting.html